CodonCode Aligner

Leading DNA sequence analysis software with advanced features for research & biomedicine
Oct 09, 2026
Rating:
3.8 on 98 votes
Category:
Developer Tools › Debugging Tools
Developer:
CodonCode Corporation
License:
Shareware $720
Total downloads:
788
Latest version:
10.0.2

Description

Top software for DNA sequence analysis, commonly used in various research fields. It stands out with unique features like contig comparison with ClustalW and muscle, trace sharpening, roundtrip editing, and base calling with PHRED. The demo version offers full functionality, except for saving and exporting.

Download of CodonCode Aligner 10.0.2 for Mac was available from the developer's website when we last checked. We cannot confirm if there is a free download of this app available. The program belongs to Developer Tools. The CodonCode Aligner installer is commonly called Aligner_Installer.dmg.

The actual developer of this software for Mac is CodonCode Corporation. The most popular versions among the program users are 4.0 and 3.7. We recommend checking the downloaded files with any free antivirus. The unique ID for this app's bundle is com.codoncode.aligner.

From the developer:

CodonCode Aligner is a leading software program for DNA sequence analysis. Widely used in evolution research, biogeography, and other biomedical fields, it offers many features not found in competing programs, including the ability to compare contigs with ClustalW and muscle, trace sharpening, roundtrip editing, and base calling with PHRED, as well as standard features like assembly, trace and contig editing, end clipping, and mutation detection.

You may want to check out more Mac applications, such as Alignment for Xcode, VocALign Project or VocALign Project for Pro Tools, which might be similar to CodonCode Aligner.

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