Downloading Trans-Proteomic Pipeline 4.8.0 from the developer's website was possible when we last checked. We cannot confirm if there is a free download of this software available. We recommend checking the downloaded files with any free antivirus. The software belongs to Education Tools. This free program was originally produced by Institute for Systems Biology. The most popular versions of the software are 4.8 and 4.7.
From the developer:
Trans-Proteomic Pipeline is a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to our open mzXML format. The program includes all of the steps of the ISB MS/MS analysis pipeline, after the database search. Most users will only need to download the TPP distribution.
You may want to check out more software, such as Pipeline Leak Rate Calculator, CrazyTalk Animator Pipeline or Pipeline, which might be similar to Trans-Proteomic Pipeline.
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