BAMBE

The program "BAMBE" (Bayesian Analysis in Molecular Biology and Evolution) is an education software package specifically falling under the science tools subcategory. The latest version, 1.0.0.1, brings advanced tools to those involved in the Bayesian analysis of phylogenies. This valuable resource, developed by Donald Simon & Bret Larget, Department of Mathematics and Computer Science, Duquesne University, enables users to perform complex analyses on aligned DNA or RNA sequence data, including those with gaps or indeterminate sites.

One of the key features of BAMBE is its use of several Metropolis-Hastings algorithms, which are essential for sampling from the joint posterior distribution of phylogenetic trees and likelihood model parameters. Alongside the main program, additional tools are available to assist in the detailed analysis of sampled trees and parameter values.

The versatility of BAMBE is further emphasized by its support for Windows XP and Windows 7 operating systems, making it accessible to a wide range of users with various system configurations. The software is distributed with the file name Bambe.exe, simplifying the download and installation process. While the latest version provides updated functionalities, previous editions like 2.0, and 1.0 are also known and utilized by some users.

As an educational tool in the realm of molecular biology and evolution, BAMBE offers several pros and cons: More

You may want to check out more software, such as StatPlus 2007, GenScn or Flashcard Tables, which might be related to BAMBE.