CrossLink

CrossLink, the latest version 1.2, is a remarkable tool designed by Daniel Huson's Lab, Tuebingen University for exploring relationships between RNA sequences. This program, categorized under Internet & Network and specifically listed as Network Tools, stands out due to its robust analytical capabilities. It is compatible with Windows 7, making it accessible for a wide range of users working on this operating system.

The main program files include CrossLink.exe, XL2003 Launcher.exe, XL2004 Launcher.exe, xlink32.exe, and XlinkLogin.exe. These files play crucial roles in the execution and functionality of the software, allowing users to dive deep into RNA sequence relationships with ease.

CrossLink harnesses the power of well-established tools like BLAST, Vmatch, and RNAhybrid after an initial parametrization phase. This allows it to determine RNA sequence relationships effectively. The result is a graphical network where nucleotide sequences are displayed as nodes and their relationships as links. Users can easily interact with this network: clicking on links to view corresponding alignments or adjusting the types and numbers of displayed relationships using value histograms and thresholds.

Additionally, CrossLink offers robust network layout operations and navigation capabilities, enhancing the visualization and the user experience. The capacity to adjust the display parameters interactively makes it a flexible and user-friendly option for detailed RNA sequence analysis.

For those interested in exploring this tool, it is available for download and can be accessed free of charge, ensuring that this powerful software is within reach for any researcher or student in need.

Pros:

• Comprehensive visualization of RNA sequence relationships.
• Utilizes established analytical tools like BLAST, Vmatch, and RNAhybrid.
• Interactive and adjustable display features.
• Advanced network layout and navigation operations.
• Available for free download.

Cons:

• Limited to Windows 7 OS.
• May require a steep learning curve for beginners.

You may want to check out more software, such as A1 Sitemap Generator or Gunpoint, which might be similar to CrossLink.