Jalview

Jalview is a free program for multiple sequence alignment editing, visualization, and analysis. In its latest version, 2.11.2.7, users can download the software and start exploring the wide range of features it offers. The program file name, Jalview.exe, suggests ease of use and quick installation.

Developed by The Barton Group, Jalview stands out in the Science Tools subcategory of Education programs. This versatile tool allows you to view and edit sequence alignments, providing robust functionalities for analyzing them with phylogenetic trees and principal components analysis (PCA) plots. Additionally, Jalview lets users explore molecular structures and annotations, making it indispensable for researchers and students alike.

This tool is supported across various Windows operating systems, including Windows XP, Vista, 7, 8, 10, and 11, offering flexibility and compatibility for a wide range of users. Importantly, older versions such as 2.9, 2.8, and 2.6 are also available for download, ensuring that you can find a version that meets your specific needs.

Pros:

• Free and easy to download.
• Supported on a wide range of Windows operating systems.
• Comprehensive features for sequence alignment, phylogenetic trees, and PCA plots.
• Developed by the reputable The Barton Group.

Cons:

• May have a steep learning curve for beginners.
• Some advanced features can be complex without proper guidance.

You may want to check out more software, such as ChemCAD, Vector NTI Advance or PHStat2, which might be similar to Jalview.