Trans Proteomics Pipeline
Our website provides a free download of Trans Proteomics Pipeline 4.8.0. The software is included in Education Tools. The actual developer of the free software is Institute for Systems Biology. The following versions: 4.8, 4.6 and 4.5 are the most frequently downloaded ones by the program users.
From the developer:
Trans-Proteomic Pipeline (TPP) is an open source program that includes all the steps of the ISB MS/MS analysis pipeline after the database search. It provides support for the conversion of search engine results to a unified format, conversion of RAW data to open formats and statistical validation of peptide and protein identifications.
You may want to check out more software, such as Thermo Proteome Discoverer, Pattern Lab for Proteomics or Progenesis QI for proteomics, which might be similar to Trans Proteomics Pipeline.